recipe bioconductor-erccdashboard

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/erccdashboard.html

License

GPL (>=2)

Recipe

/bioconductor-erccdashboard/meta.yaml

package bioconductor-erccdashboard

(downloads) docker_bioconductor-erccdashboard

Versions

1.18.0-0, 1.16.1-0, 1.16.0-0

Depends bioconductor-edger

>=3.26.0,<3.27.0

Depends bioconductor-limma

>=3.40.0,<3.41.0

Depends bioconductor-qvalue

>=2.16.0,<2.17.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

>=2.1.0

Depends r-gplots

Depends r-gridextra

>=2.0.0

Depends r-gtools

Depends r-locfit

Depends r-mass

Depends r-plyr

Depends r-reshape2

Depends r-rocr

Depends r-scales

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-erccdashboard

and update with:

conda update bioconductor-erccdashboard

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-erccdashboard:<tag>

(see bioconductor-erccdashboard/tags for valid values for <tag>)