- recipe bioconductor-escape
Easy single cell analysis platform for enrichment
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/escape.html
- License:
GPL-2
- Recipe:
A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize GSEA across individual cells.
- package bioconductor-escape¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-gseabase
>=1.60.0,<1.61.0
bioconductor-gsva
>=1.46.0,<1.47.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-ucell
>=2.2.0,<2.3.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-escape
and update with:
conda update bioconductor-escape
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-escape:<tag>
(see bioconductor-escape/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-escape/README.html)