- recipe bioconductor-ewce
Expression Weighted Celltype Enrichment
- Homepage:
- License:
GPL-3
- Recipe:
Used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.
- package bioconductor-ewce¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-ewcedata
>=1.6.0,<1.7.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-orthogene
>=1.4.0,<1.5.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-rnomni
>=1.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ewce
and update with:
conda update bioconductor-ewce
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ewce:<tag>
(see bioconductor-ewce/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ewce/README.html)