recipe bioconductor-ewce

Expression Weighted Celltype Enrichment

Homepage

https://bioconductor.org/packages/3.14/bioc/html/EWCE.html

License

Artistic-2.0

Recipe

/bioconductor-ewce/meta.yaml

Used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

package bioconductor-ewce

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-ewcedata >=1.2.0,<1.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cowplot

• r-future

• r-ggdendro

• r-ggplot2

• r-gridextra

• r-hgnchelper

• r-matrix

• r-reshape2

• r-rnomni >=1.0

• r-scales

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ewce

and update with:

conda update bioconductor-ewce

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ewce:<tag>

(see bioconductor-ewce/tags for valid values for <tag>)

Download stats

Link to this page

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