recipe bioconductor-exomecopy

Copy number variant detection from exome sequencing read depth

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/exomeCopy.html

License:

GPL (>= 2)

Recipe:

/bioconductor-exomecopy/meta.yaml

Links:

biotools: exomecopy, doi: 10.2202/1544-6115.1732

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

package bioconductor-exomecopy

(downloads) docker_bioconductor-exomecopy

Versions:
1.40.0-21.40.0-11.40.0-01.38.0-01.36.0-11.36.0-01.34.0-01.32.0-01.30.0-1

1.40.0-21.40.0-11.40.0-01.38.0-01.36.0-11.36.0-01.34.0-01.32.0-01.30.0-11.28.0-01.26.0-01.24.0-01.22.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-exomecopy

and update with:

conda update bioconductor-exomecopy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-exomecopy:<tag>

(see bioconductor-exomecopy/tags for valid values for <tag>)

Download stats