- recipe bioconductor-experimentsubset
Manages subsets of data with Bioconductor Experiment objects
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ExperimentSubset.html
- License
MIT + file LICENSE
- Recipe
Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.
- package bioconductor-experimentsubset¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-spatialexperiment
>=1.4.0,<1.5.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-treesummarizedexperiment
>=2.2.0,<2.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-experimentsubset
and update with:
conda update bioconductor-experimentsubset
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-experimentsubset:<tag>
(see bioconductor-experimentsubset/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-experimentsubset/README.html)