recipe bioconductor-experimentsubset

Manages subsets of data with Bioconductor Experiment objects

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ExperimentSubset.html

License

MIT + file LICENSE

Recipe

/bioconductor-experimentsubset/meta.yaml

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

package bioconductor-experimentsubset

Versions

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-spatialexperiment >=1.4.0,<1.5.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-treesummarizedexperiment >=2.2.0,<2.3.0

• r-base >=4.1,<4.2.0a0

• r-matrix

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-experimentsubset

and update with:

conda update bioconductor-experimentsubset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-experimentsubset:<tag>

(see bioconductor-experimentsubset/tags for valid values for <tag>)

Download stats

Link to this page

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