- recipe bioconductor-expressionatlas
Download datasets from EMBL-EBI Expression Atlas
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/ExpressionAtlas.html
- License
GPL (>= 3)
- Recipe
This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.
- package bioconductor-expressionatlas¶
-
- Versions
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-expressionatlas
and update with:
conda update bioconductor-expressionatlas
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-expressionatlas:<tag>
(see bioconductor-expressionatlas/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-expressionatlas/README.html)