- recipe bioconductor-extrachips
Additional functions for working with ChIP-Seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/extraChIPs.html
- License:
GPL-3
- Recipe:
This package builds on existing tools and adds some simple but extremely useful capabilities for working with ChIP-Seq data. The focus is on detecting differential binding windows/regions. One set of functions focusses on set-operations retaining mcols for GRanges objects, whilst another group of functions are to aid visualisation of results. Coercion to tibble objects is also included.
- package bioconductor-extrachips¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocio
>=1.8.0,<1.9.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-csaw
>=1.32.0,<1.33.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-enrichedheatmap
>=1.27.0,<1.28.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicinteractions
>=1.32.0,<1.33.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-interactionset
>=1.26.0,<1.27.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-extrachips
and update with:
conda update bioconductor-extrachips
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-extrachips:<tag>
(see bioconductor-extrachips/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-extrachips/README.html)