recipe bioconductor-factr

Functional Annotation of Custom Transcriptomes

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/factR.html

License:

file LICENSE

Recipe:

/bioconductor-factr/meta.yaml

factR contain tools to process and interact with custom-assembled transcriptomes (GTF). At its core, factR constructs CDS information on custom transcripts and subsequently predicts its functional output. In addition, factR has tools capable of plotting transcripts, correcting chromosome and gene information and shortlisting new transcripts.

package bioconductor-factr

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-drawproteins >=1.18.0,<1.19.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-wiggleplotr >=1.22.0,<1.23.0

• r-base >=4.2,<4.3.0a0

• r-crayon

• r-data.table >=1.14

• r-dplyr >=1.0

• r-ggplot2 >=3.3

• r-pbapply >=1.5

• r-purrr >=0.3

• r-rcurl >=1.98

• r-rlang >=1.0

• r-stringr >=1.4

• r-tibble >=3.1

• r-tidyr >=1.1

• r-xml >=3.99

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-factr

and update with:

conda update bioconductor-factr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-factr:<tag>

(see bioconductor-factr/tags for valid values for <tag>)

Download stats

Link to this page

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