- recipe bioconductor-factr
Functional Annotation of Custom Transcriptomes
- Homepage:
- License:
file LICENSE
- Recipe:
factR contain tools to process and interact with custom-assembled transcriptomes (GTF). At its core, factR constructs CDS information on custom transcripts and subsequently predicts its functional output. In addition, factR has tools capable of plotting transcripts, correcting chromosome and gene information and shortlisting new transcripts.
- package bioconductor-factr¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-drawproteins
>=1.18.0,<1.19.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-wiggleplotr
>=1.22.0,<1.23.0
r-base
>=4.2,<4.3.0a0
r-data.table
>=1.14
r-dplyr
>=1.0
r-ggplot2
>=3.3
r-pbapply
>=1.5
r-purrr
>=0.3
r-rcurl
>=1.98
r-rlang
>=1.0
r-stringr
>=1.4
r-tibble
>=3.1
r-tidyr
>=1.1
r-xml
>=3.99
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-factr
and update with:
conda update bioconductor-factr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-factr:<tag>
(see bioconductor-factr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-factr/README.html)