- recipe bioconductor-fastqcleaner
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/FastqCleaner.html
- License:
MIT + file LICENSE
- Recipe:
An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.
- package bioconductor-fastqcleaner¶
-
- Versions:
1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-shortread
>=1.52.0,<1.53.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
r-rcpp
>=0.12.12
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-fastqcleaner
and update with:
conda update bioconductor-fastqcleaner
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fastqcleaner:<tag>
(see bioconductor-fastqcleaner/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fastqcleaner/README.html)