- recipe bioconductor-fcoex
FCBF-based Co-Expression Networks for Single Cells
- Homepage
- License
GPL-3
- Recipe
The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is adapted from the CEMiTool package, relying on visualizations and code designed and written by CEMiTool's authors.
- package bioconductor-fcoex¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-clusterprofiler
>=4.2.0,<4.3.0
bioconductor-fcbf
>=2.2.0,<2.3.0
bioconductor-pathwaypca
>=1.10.0,<1.11.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-fcoex
and update with:
conda update bioconductor-fcoex
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fcoex:<tag>
(see bioconductor-fcoex/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fcoex/README.html)