recipe bioconductor-fcscan

fcScan for detecting clusters of coordinates with user defined options

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/fcScan.html

License:

Artistic-2.0

Recipe:

/bioconductor-fcscan/meta.yaml

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

package bioconductor-fcscan

(downloads) docker_bioconductor-fcscan

Versions:

1.8.0-01.6.0-01.4.0-11.4.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fcscan

and update with:

conda update bioconductor-fcscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fcscan:<tag>

(see bioconductor-fcscan/tags for valid values for <tag>)

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