recipe bioconductor-fcscan

fcScan for detecting clusters of coordinates with user defined options

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/fcScan.html

License:

Artistic-2.0

Recipe:

/bioconductor-fcscan/meta.yaml

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

package bioconductor-fcscan

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-foreach

• r-plyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fcscan

and update with:

conda update bioconductor-fcscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fcscan:<tag>

(see bioconductor-fcscan/tags for valid values for <tag>)

Download stats

Link to this page

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