recipe bioconductor-fdb.infiniummethylation.hg19

Annotation package for Illumina Infinium DNA methylation probes

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/FDb.InfiniumMethylation.hg19.html

License

Artistic-2.0

Recipe

/bioconductor-fdb.infiniummethylation.hg19/meta.yaml

Compiled HumanMethylation27 and HumanMethylation450 annotations

package bioconductor-fdb.infiniummethylation.hg19

Versions

2.2.0-12,  2.2.0-11,  2.2.0-10,  2.2.0-9,  2.2.0-8,  2.2.0-7,  2.2.0-6,  2.2.0-4,  2.2.0-3, 

2.2.0-12,  2.2.0-11,  2.2.0-10,  2.2.0-9,  2.2.0-8,  2.2.0-7,  2.2.0-6,  2.2.0-4,  2.2.0-3,  2.2.0-1,  2.2.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-org.hs.eg.db >=3.14.0,<3.15.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-methylumi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fdb.infiniummethylation.hg19

and update with:

conda update bioconductor-fdb.infiniummethylation.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg19:<tag>

(see bioconductor-fdb.infiniummethylation.hg19/tags for valid values for <tag>)

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