recipe bioconductor-fdb.infiniummethylation.hg19

Annotation package for Illumina Infinium DNA methylation probes

Homepage

https://bioconductor.org/packages/3.11/data/annotation/html/FDb.InfiniumMethylation.hg19.html

License

Artistic-2.0

Recipe

/bioconductor-fdb.infiniummethylation.hg19/meta.yaml

Compiled HumanMethylation27 and HumanMethylation450 annotations

package bioconductor-fdb.infiniummethylation.hg19

Versions

2.2.0-8,  2.2.0-7,  2.2.0-6,  2.2.0-4,  2.2.0-3,  2.2.0-1,  2.2.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-org.hs.eg.db >=3.11.0,<3.12.0

• bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-methylumi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fdb.infiniummethylation.hg19

and update with:

conda update bioconductor-fdb.infiniummethylation.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg19:<tag>

(see bioconductor-fdb.infiniummethylation.hg19/tags for valid values for <tag>)

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fdb.infiniummethylation.hg19/README.html)