recipe bioconductor-fedup

Fisher's Test for Enrichment and Depletion of User-Defined Pathways

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/fedup.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-fedup/meta.yaml

An R package that tests for enrichment and depletion of user-defined pathways using a Fisher's exact test. The method is designed for versatile pathway annotation formats (eg. gmt, txt, xlsx) to allow the user to run pathway analysis on custom annotations. This package is also integrated with Cytoscape to provide network-based pathway visualization that enhances the interpretability of the results.

package bioconductor-fedup

(downloads) docker_bioconductor-fedup

Versions:

1.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fedup

and update with:

conda update bioconductor-fedup

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fedup:<tag>

(see bioconductor-fedup/tags for valid values for <tag>)

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