recipe bioconductor-fella

Interpretation and enrichment for metabolomics data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/FELLA.html

License:

GPL-3

Recipe:

/bioconductor-fella/meta.yaml

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

package bioconductor-fella

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1, 

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.2.0-0

Depends:

• bioconductor-keggrest >=1.38.0,<1.39.0

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-matrix

• r-plyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fella

and update with:

conda update bioconductor-fella

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fella:<tag>

(see bioconductor-fella/tags for valid values for <tag>)

Download stats

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