recipe bioconductor-ffpe

Quality assessment and control for FFPE microarray expression data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ffpe.html

License

GPL (>2)

Recipe

/bioconductor-ffpe/meta.yaml

Links

biotools: ffpe

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

package bioconductor-ffpe

Versions

1.38.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0, 

1.38.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-lumi >=2.46.0,<2.47.0

• bioconductor-methylumi >=2.40.0,<2.41.0

• r-base >=4.1,<4.2.0a0

• r-sfsmisc

• r-ttr

Required By

• bioconductor-benchdamic

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ffpe

and update with:

conda update bioconductor-ffpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>

(see bioconductor-ffpe/tags for valid values for <tag>)

Download stats

Link to this page

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