- recipe bioconductor-ffpe
Quality assessment and control for FFPE microarray expression data
- Homepage:
- License:
GPL (>2)
- Recipe:
- Links:
biotools: ffpe
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
- package bioconductor-ffpe¶
-
- Versions:
1.38.0-1
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.38.0-1
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
- Depends:
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-lumi
>=2.46.0,<2.47.0
bioconductor-methylumi
>=2.40.0,<2.41.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ffpe
and update with:
conda update bioconductor-ffpe
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>
(see bioconductor-ffpe/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ffpe/README.html)