recipe bioconductor-ffpe

Quality assessment and control for FFPE microarray expression data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ffpe.html

License:

GPL (>2)

Recipe:

/bioconductor-ffpe/meta.yaml

Links:

biotools: ffpe

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

package bioconductor-ffpe

Versions:

1.42.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-lumi >=2.50.0,<2.51.0

• bioconductor-methylumi >=2.44.0,<2.45.0

• r-base >=4.2,<4.3.0a0

• r-sfsmisc

• r-ttr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ffpe

and update with:

conda update bioconductor-ffpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ffpe:<tag>

(see bioconductor-ffpe/tags for valid values for <tag>)

Download stats

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