recipe bioconductor-fgnet

Functional Gene Networks derived from biological enrichment analyses

Homepage

https://bioconductor.org/packages/3.11/bioc/html/FGNet.html

License

GPL (>= 2)

Recipe

/bioconductor-fgnet/meta.yaml

Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

package bioconductor-fgnet

Versions

3.22.0-0,  3.20.0-0,  3.18.0-1,  3.18.0-0,  3.16.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-hwriter

• r-igraph >=0.6

• r-plotrix

• r-png

• r-r.utils

• r-rcolorbrewer

• r-reshape2

• r-xml

Required By

• bioconductor-intramirexplorer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fgnet

and update with:

conda update bioconductor-fgnet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fgnet:<tag>

(see bioconductor-fgnet/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fgnet/README.html)