recipe bioconductor-fgnet

Functional Gene Networks derived from biological enrichment analyses

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/FGNet.html

License:

GPL (>= 2)

Recipe:

/bioconductor-fgnet/meta.yaml

Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

package bioconductor-fgnet

Versions:

3.32.0-0,  3.28.0-0,  3.26.0-0,  3.24.0-1,  3.24.0-0,  3.23.1-0,  3.22.0-0,  3.20.0-0,  3.18.0-1, 

3.32.0-0,  3.28.0-0,  3.26.0-0,  3.24.0-1,  3.24.0-0,  3.23.1-0,  3.22.0-0,  3.20.0-0,  3.18.0-1,  3.18.0-0,  3.16.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-hwriter

• r-igraph >=0.6

• r-plotrix

• r-png

• r-r.utils

• r-rcolorbrewer

• r-reshape2

• r-xml

Required By:

• bioconductor-intramirexplorer

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fgnet

and update with:

conda update bioconductor-fgnet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fgnet:<tag>

(see bioconductor-fgnet/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fgnet/README.html)