- recipe bioconductor-fgsea
Fast Gene Set Enrichment Analysis
- Homepage:
- License:
MIT + file LICENCE
- Recipe:
- Links:
biotools: fgsea, doi: 10.1101/060012
The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.
- package bioconductor-fgsea¶
-
- Versions:
1.24.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.24.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.1-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-ggplot2
>=2.2.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-fgsea
and update with:
conda update bioconductor-fgsea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fgsea:<tag>
(see bioconductor-fgsea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fgsea/README.html)