- recipe bioconductor-fieldeffectcrc
Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/FieldEffectCrc.html
- License
Artistic-2.0
- Recipe
Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).
- package bioconductor-fieldeffectcrc¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-biocstyle
>=2.22.0,<2.23.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-experimenthub
>=2.2.0,<2.3.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-fieldeffectcrc
and update with:
conda update bioconductor-fieldeffectcrc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fieldeffectcrc:<tag>
(see bioconductor-fieldeffectcrc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fieldeffectcrc/README.html)