recipe bioconductor-fieldeffectcrc

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/FieldEffectCrc.html

License:

Artistic-2.0

Recipe:

/bioconductor-fieldeffectcrc/meta.yaml

Processed RNA-seq data for 1,139 human primary colorectal tissue samples across three phenotypes, including tumor, normal adjacent-to-tumor, and healthy, available as Synapse ID syn22237139 on synapse.org. Data have been parsed into SummarizedExperiment objects available via ExperimentHub to facilitate reproducibility and extension of results from Dampier et al. (PMCID: PMC7386360, PMID: 32764205).

package bioconductor-fieldeffectcrc

Versions:

1.8.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-data-packages >=20221110

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

• r-runit

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fieldeffectcrc

and update with:

conda update bioconductor-fieldeffectcrc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fieldeffectcrc:<tag>

(see bioconductor-fieldeffectcrc/tags for valid values for <tag>)

Download stats

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