recipe bioconductor-findit2

find influential TF and Target based on multi-omics data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/FindIT2.html

License:

Artistic-2.0

Recipe:

/bioconductor-findit2/meta.yaml

This package implements functions to find influential TF and target based on different input type. It have five module: Multi-peak multi-gene annotaion(mmPeakAnno module), Calculate regulation potential(calcRP module), Find influential Target based on ChIP-Seq and RNA-Seq data(Find influential Target module), Find influential TF based on different input(Find influential TF module), Calculate peak-gene or peak-peak correlation(peakGeneCor module). And there are also some other useful function like integrate different source information, calculate jaccard similarity for your TF.

package bioconductor-findit2

(downloads) docker_bioconductor-findit2

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-findit2

and update with:

conda update bioconductor-findit2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-findit2:<tag>

(see bioconductor-findit2/tags for valid values for <tag>)

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