recipe bioconductor-fishalyser

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/FISHalyseR.html

License

Artistic-2.0

Recipe

/bioconductor-fishalyser/meta.yaml

Links

biotools: fishalyser, doi: 10.1038/nmeth.3252

package bioconductor-fishalyser

(downloads) docker_bioconductor-fishalyser

Versions

1.16.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fishalyser

and update with:

conda update bioconductor-fishalyser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fishalyser:<tag>

(see bioconductor-fishalyser/tags for valid values for <tag>)