- recipe bioconductor-fishpond
Fishpond: downstream methods and tools for expression data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/fishpond.html
- License:
GPL-2
- Recipe:
Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains a number of utilities for working with Salmon and Alevin quantification files.
- package bioconductor-fishpond¶
-
- Versions:
2.4.0-0
,2.0.1-1
,2.0.1-0
,2.0.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,2.4.0-0
,2.0.1-1
,2.0.1-0
,2.0.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.1-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-qvalue
>=2.30.0,<2.31.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-fishpond
and update with:
conda update bioconductor-fishpond
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fishpond:<tag>
(see bioconductor-fishpond/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fishpond/README.html)