recipe bioconductor-fishpond

Fishpond: downstream methods and tools for expression data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/fishpond.html

License:

GPL-2

Recipe:

/bioconductor-fishpond/meta.yaml

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains a number of utilities for working with Salmon and Alevin quantification files.

package bioconductor-fishpond

Versions:

2.4.0-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

2.4.0-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-abind

• r-base >=4.2,<4.3.0a0

• r-gtools

• r-jsonlite

• r-matrix

• r-matrixstats

• r-svmisc

Required By:

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fishpond

and update with:

conda update bioconductor-fishpond

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fishpond:<tag>

(see bioconductor-fishpond/tags for valid values for <tag>)

Download stats

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