- recipe bioconductor-fishpond
Fishpond: differential transcript and gene expression with inferential replicates
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/fishpond.html
- License
GPL-2
- Recipe
Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.
- package bioconductor-fishpond¶
-
- Versions
2.0.1-0
,2.0.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.1-0
- Depends
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-fishpond
and update with:
conda update bioconductor-fishpond
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fishpond:<tag>
(see bioconductor-fishpond/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fishpond/README.html)