recipe bioconductor-fishpond

Fishpond: differential transcript and gene expression with inferential replicates

Homepage

https://bioconductor.org/packages/3.13/bioc/html/fishpond.html

License

GPL-2

Recipe

/bioconductor-fishpond/meta.yaml

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.

package bioconductor-fishpond

Versions

1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0

Depends

• bioconductor-qvalue >=2.24.0,<2.25.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-abind

• r-base >=4.1,<4.2.0a0

• r-gtools

• r-matrix

• r-matrixstats

• r-rcpp

• r-svmisc

Required By

• bioconductor-singlecelltk

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fishpond

and update with:

conda update bioconductor-fishpond

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fishpond:<tag>

(see bioconductor-fishpond/tags for valid values for <tag>)

Download stats

Link to this page

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