recipe bioconductor-fishpond

Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/fishpond.html

License

GPL-2

Recipe

/bioconductor-fishpond/meta.yaml

package bioconductor-fishpond

Versions

1.0.1-0

Depends

• bioconductor-qvalue >=2.16.0,<2.17.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• r-abind

• r-base >=3.6,<3.7.0a0

• r-gtools

• r-matrixstats

• r-svmisc

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fishpond

and update with:

conda update bioconductor-fishpond

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fishpond:<tag>

(see bioconductor-fishpond/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fishpond/README.html)