- recipe bioconductor-flames
FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/FLAMES.html
- License
GPL (>= 2)
- Recipe
Semi-supervised isoform detection and annotation from both bulk and single-cell long read RNA-seq data. Flames provides automated pipelines for analysing isoforms, as well as intermediate functions for manual execution.
- package bioconductor-flames¶
-
- Versions
1.0.2-1
,1.0.2-0
,0.99.31-0
- Depends
bioconductor-basilisk
>=1.6.0,<1.7.0
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-scuttle
>=1.4.0,<1.5.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-flames
and update with:
conda update bioconductor-flames
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-flames:<tag>
(see bioconductor-flames/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-flames/README.html)