recipe bioconductor-flames

FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/FLAMES.html

License

GPL (>= 2)

Recipe

/bioconductor-flames/meta.yaml

Semi-supervised isoform detection and annotation from both bulk and single-cell long read RNA-seq data. Flames provides automated pipelines for analysing isoforms, as well as intermediate functions for manual execution.

package bioconductor-flames

Versions

1.0.2-1,  1.0.2-0,  0.99.31-0

Depends

• bioconductor-basilisk >=1.6.0,<1.7.0

• bioconductor-rhtslib >=1.26.0,<1.27.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-scater >=1.22.0,<1.23.0

• bioconductor-scuttle >=1.4.0,<1.5.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-zlibbioc >=1.40.0,<1.41.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-magrittr

• r-rcpp

• r-reticulate

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flames

and update with:

conda update bioconductor-flames

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flames:<tag>

(see bioconductor-flames/tags for valid values for <tag>)

Download stats

Link to this page

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