recipe bioconductor-flowai

Automatic and interactive quality control for flow cytometry data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/flowAI.html

License

GPL (>= 2)

Recipe

/bioconductor-flowai/meta.yaml

Links

biotools: flowai, doi: 10.1093/bioinformatics/btw191

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

package bioconductor-flowai

Versions

1.18.1-0,  1.16.0-0,  1.14.0-1,  1.12.7-0,  1.12.1-0,  1.10.1-0,  1.6.2-0,  1.4.4-0,  1.2.9-0, 

1.18.1-0,  1.16.0-0,  1.14.0-1,  1.12.7-0,  1.12.1-0,  1.10.1-0,  1.6.2-0,  1.4.4-0,  1.2.9-0,  1.2.8-0

Depends

• bioconductor-flowcore >=2.0.0,<2.1.0

• r-base >=4.0,<4.1.0a0

• r-changepoint

• r-ggplot2

• r-knitr

• r-plyr

• r-rcolorbrewer

• r-reshape2

• r-rmarkdown

• r-scales

Required By

• ig-flowtools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowai

and update with:

conda update bioconductor-flowai

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowai:<tag>

(see bioconductor-flowai/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-flowai/README.html)