recipe bioconductor-flowsorted.cordbloodcombined.450k

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/FlowSorted.CordBloodCombined.450k.html

License

GPL-3

Recipe

/bioconductor-flowsorted.cordbloodcombined.450k/meta.yaml

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

package bioconductor-flowsorted.cordbloodcombined.450k

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.1-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-flowsorted.blood.epic >=1.12.0,<1.13.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19 >=0.6.0,<0.7.0

• bioconductor-minfi >=1.40.0,<1.41.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowsorted.cordbloodcombined.450k

and update with:

conda update bioconductor-flowsorted.cordbloodcombined.450k

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowsorted.cordbloodcombined.450k:<tag>

(see bioconductor-flowsorted.cordbloodcombined.450k/tags for valid values for <tag>)

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