recipe bioconductor-flowworkspace

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/flowWorkspace.html

License

Artistic-2.0

Recipe

/bioconductor-flowworkspace/meta.yaml

Links

biotools: flowworkspace, doi: 10.1186/1471-2105-13-252

package bioconductor-flowworkspace

(downloads) docker_bioconductor-flowworkspace

Versions

3.30.2-0, 3.30.1-0, 3.28.2-0, 3.26.2-0, 3.24.4-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowworkspace

and update with:

conda update bioconductor-flowworkspace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowworkspace:<tag>

(see bioconductor-flowworkspace/tags for valid values for <tag>)