- recipe bioconductor-funchip
Clustering and Alignment of ChIP-Seq peaks based on their shapes
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/FunChIP.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: funchip, doi: 10.1093/bioinformatics/btx201
Preprocessing and smoothing of ChIP-Seq peaks and efficient implementation of the k-mean alignment algorithm to classify them.
- package bioconductor-funchip¶
-
- Versions:
1.24.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.24.0-0
,1.20.0-2
,1.20.0-1
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-funchip
and update with:
conda update bioconductor-funchip
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-funchip:<tag>
(see bioconductor-funchip/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-funchip/README.html)