recipe bioconductor-funchip

Clustering and Alignment of ChIP-Seq peaks based on their shapes

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/FunChIP.html

License:

Artistic-2.0

Recipe:

/bioconductor-funchip/meta.yaml

Links:

biotools: funchip, doi: 10.1093/bioinformatics/btx201

Preprocessing and smoothing of ChIP-Seq peaks and efficient implementation of the k-mean alignment algorithm to classify them.

package bioconductor-funchip

Versions:

1.24.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.24.0-0,  1.20.0-2,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-fda

• r-foreach

• r-rcolorbrewer

• r-rcpp

• r-shiny

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-funchip

and update with:

conda update bioconductor-funchip

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-funchip:<tag>

(see bioconductor-funchip/tags for valid values for <tag>)

Download stats

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