recipe bioconductor-funtoonorm

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Homepage

https://bioconductor.org/packages/3.11/bioc/html/funtooNorm.html

License

GPL-3

Recipe

/bioconductor-funtoonorm/meta.yaml

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

package bioconductor-funtoonorm

Versions

1.12.0-0, 1.10.0-0, 1.8.0-1, 1.6.0-0

Depends

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-minfi >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

• r-matrixstats

• r-pls

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-funtoonorm

and update with:

conda update bioconductor-funtoonorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-funtoonorm:<tag>

(see bioconductor-funtoonorm/tags for valid values for <tag>)

Link to this page

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