recipe bioconductor-ga4ghclient

A Bioconductor package for accessing GA4GH API data servers

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GA4GHclient.html

License:

GPL (>= 2)

Recipe:

/bioconductor-ga4ghclient/meta.yaml

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

package bioconductor-ga4ghclient

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-httr

• r-jsonlite

Required By:

• bioconductor-ga4ghshiny

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ga4ghclient

and update with:

conda update bioconductor-ga4ghclient

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ga4ghclient:<tag>

(see bioconductor-ga4ghclient/tags for valid values for <tag>)

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