recipe bioconductor-gdr

Umbrella package for R packages in the gDR suite






Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

package bioconductor-gdr

(downloads) docker_bioconductor-gdr



depends bioconductor-gdrcore:


depends bioconductor-gdrimport:


depends bioconductor-gdrutils:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gdr

and update with::

   mamba update bioconductor-gdr

To create a new environment, run:

mamba create --name myenvname bioconductor-gdr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gdr/tags`_ for valid values for ``<tag>``)

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