recipe bioconductor-gdrimport

Package for handling the import of dose-response data






The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

package bioconductor-gdrimport

(downloads) docker_bioconductor-gdrimport



depends bioconductor-bumpymatrix:


depends bioconductor-coregx:


depends bioconductor-gdrutils:


depends bioconductor-multiassayexperiment:


depends bioconductor-pharmacogx:


depends bioconductor-s4vectors:


depends bioconductor-summarizedexperiment:


depends r-assertthat:

depends r-base:


depends r-checkmate:

depends r-data.table:

depends r-futile.logger:

depends r-magrittr:

depends r-openxlsx:

depends r-readxl:

depends r-rio:

depends r-stringi:

depends r-tibble:

depends r-xml:

depends r-yaml:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gdrimport

and update with::

   mamba update bioconductor-gdrimport

To create a new environment, run:

mamba create --name myenvname bioconductor-gdrimport

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gdrimport/tags`_ for valid values for ``<tag>``)

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