recipe bioconductor-gemini

GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

Homepage

https://bioconductor.org/packages/3.12/bioc/html/gemini.html

License

BSD_3_clause + file LICENSE

Recipe

/bioconductor-gemini/meta.yaml

GEMINI uses log-fold changes to model sample-dependent and independent effects, and uses a variational Bayes approach to infer these effects. The inferred effects are used to score and identify genetic interactions, such as lethality and recovery. More details can be found in Zamanighomi et al. 2019 (in press).

package bioconductor-gemini

Versions

1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-ggplot2

• r-magrittr

• r-mixtools

• r-pbmcapply

• r-scales

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gemini

and update with:

conda update bioconductor-gemini

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gemini:<tag>

(see bioconductor-gemini/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gemini/README.html)