-
recipe
bioconductor-gemini
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/gemini.html
- License
BSD_3_clause + file LICENSE
- Recipe
GEMINI uses log-fold changes to model sample-dependent and independent effects, and uses a variational Bayes approach to infer these effects. The inferred effects are used to score and identify genetic interactions, such as lethality and recovery. More details can be found in Zamanighomi et al. 2019 (in press).
-
package
bioconductor-gemini
¶ -
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-gemini
and update with:
conda update bioconductor-gemini
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gemini:<tag>
(see bioconductor-gemini/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gemini/README.html)