recipe bioconductor-genebreak

Gene Break Detection

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GeneBreak.html

License:

GPL-2

Recipe:

/bioconductor-genebreak/meta.yaml

Links:

biotools: genebreak, doi: 10.12688/f1000research.9259.1

Recurrent breakpoint gene detection on copy number aberration profiles.

package bioconductor-genebreak

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-cghbase >=1.58.0,<1.59.0

• bioconductor-cghcall >=2.60.0,<2.61.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-qdnaseq >=1.34.0,<1.35.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genebreak

and update with:

conda update bioconductor-genebreak

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genebreak:<tag>

(see bioconductor-genebreak/tags for valid values for <tag>)

Download stats

Link to this page

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