recipe bioconductor-geneexpressionsignature

Gene Expression Signature based Similarity Metric

Homepage

https://bioconductor.org/packages/3.14/bioc/html/GeneExpressionSignature.html

License

GPL-2

Recipe

/bioconductor-geneexpressionsignature/meta.yaml

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

package bioconductor-geneexpressionsignature

Versions

1.40.0-0,  1.38.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneexpressionsignature

and update with:

conda update bioconductor-geneexpressionsignature

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneexpressionsignature:<tag>

(see bioconductor-geneexpressionsignature/tags for valid values for <tag>)

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