- recipe bioconductor-geneexpressionsignature
Gene Expression Signature based Similarity Metric
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/GeneExpressionSignature.html
- License
GPL-2
- Recipe
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
- package bioconductor-geneexpressionsignature¶
-
- Versions
1.40.0-0
,1.38.0-0
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.28.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-geneexpressionsignature
and update with:
conda update bioconductor-geneexpressionsignature
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-geneexpressionsignature:<tag>
(see bioconductor-geneexpressionsignature/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-geneexpressionsignature/README.html)