recipe bioconductor-genelendatabase

Lengths of mRNA transcripts for a number of genomes

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/geneLenDataBase.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-genelendatabase/meta.yaml

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser

package bioconductor-genelendatabase

Versions:

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1, 

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.6.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-goseq

• bioconductor-smite

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genelendatabase

and update with:

conda update bioconductor-genelendatabase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genelendatabase:<tag>

(see bioconductor-genelendatabase/tags for valid values for <tag>)

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