recipe bioconductor-genelendatabase

Lengths of mRNA transcripts for a number of genomes

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/geneLenDataBase.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-genelendatabase/meta.yaml

Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.

package bioconductor-genelendatabase

(downloads) docker_bioconductor-genelendatabase

versions:
1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.6.0-0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-genomicfeatures:

>=1.58.0,<1.59.0

depends bioconductor-rtracklayer:

>=1.66.0,<1.67.0

depends bioconductor-txdbmaker:

>=1.2.0,<1.3.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-genelendatabase

and update with::

   mamba update bioconductor-genelendatabase

To create a new environment, run:

mamba create --name myenvname bioconductor-genelendatabase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-genelendatabase:<tag>

(see `bioconductor-genelendatabase/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genelendatabase/README.html)