recipe bioconductor-genenetworkbuilder

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GeneNetworkBuilder.html

License

GPL (>= 2)

Recipe

/bioconductor-genenetworkbuilder/meta.yaml

package bioconductor-genenetworkbuilder

Versions

1.26.1-0, 1.24.1-0, 1.24.0-0

Depends

• bioconductor-graph >=1.62.0,<1.63.0

• bioconductor-rgraphviz >=2.28.0,<2.29.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-htmlwidgets

• r-plyr

• r-rcpp >=0.9.13

• r-rjson

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genenetworkbuilder

and update with:

conda update bioconductor-genenetworkbuilder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genenetworkbuilder:<tag>

(see bioconductor-genenetworkbuilder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genenetworkbuilder/README.html)