- recipe bioconductor-geneplast
Evolutionary and plasticity analysis of orthologous groups
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/geneplast.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: geneplast, doi: 10.1038/nmeth.3252
Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
- package bioconductor-geneplast¶
-
- Versions:
1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.3-0
,1.10.0-0
,1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.3-0
,1.10.0-0
,1.8.0-0
,1.6.2-0
,1.4.0-0
- Depends:
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-geneplast
and update with:
conda update bioconductor-geneplast
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-geneplast:<tag>
(see bioconductor-geneplast/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-geneplast/README.html)