recipe bioconductor-geneplast

Evolutionary and plasticity analysis of orthologous groups

Homepage

https://bioconductor.org/packages/3.11/bioc/html/geneplast.html

License

GPL (>= 2)

Recipe

/bioconductor-geneplast/meta.yaml

Links

biotools: geneplast, doi: 10.1038/nmeth.3252

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

package bioconductor-geneplast

Versions

1.14.0-0,  1.12.0-0,  1.10.3-0,  1.10.0-0,  1.8.0-0,  1.6.2-0,  1.4.0-0

Depends

• r-ape

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-igraph

• r-snow

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneplast

and update with:

conda update bioconductor-geneplast

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneplast:<tag>

(see bioconductor-geneplast/tags for valid values for <tag>)

Link to this page

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