recipe bioconductor-generegionscan

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GeneRegionScan.html

License

GPL (>= 2)

Recipe

/bioconductor-generegionscan/meta.yaml

Links

biotools: generegionscan

package bioconductor-generegionscan

(downloads) docker_bioconductor-generegionscan

Versions

1.40.0-1, 1.38.0-0, 1.36.0-0, 1.34.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-generegionscan

and update with:

conda update bioconductor-generegionscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-generegionscan:<tag>

(see bioconductor-generegionscan/tags for valid values for <tag>)