recipe bioconductor-genestructuretools

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GeneStructureTools.html

License

BSD_3_clause + file LICENSE

Recipe

/bioconductor-genestructuretools/meta.yaml

package bioconductor-genestructuretools

(downloads) docker_bioconductor-genestructuretools

Versions

1.2.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome.mmusculus.ucsc.mm10

>=1.4.0,<1.5.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-plyr

Depends r-stringdist

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genestructuretools

and update with:

conda update bioconductor-genestructuretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genestructuretools:<tag>

(see bioconductor-genestructuretools/tags for valid values for <tag>)