recipe bioconductor-genesummary

RefSeq Gene Summaries

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/GeneSummary.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-genesummary/meta.yaml

This package provides long description of genes collected from the RefSeq database. The text in "COMMENT" section started with "Summary" is extracted as the description of the gene. The long text descriptions can be used for analysis such as text mining.

package bioconductor-genesummary

(downloads) docker_bioconductor-genesummary

versions:

0.99.6-0,  0.99.4-1,  0.99.4-0,  0.99.3-1,  0.99.3-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-genesummary

and update with::

   mamba update bioconductor-genesummary

To create a new environment, run:

mamba create --name myenvname bioconductor-genesummary

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-genesummary:<tag>

(see `bioconductor-genesummary/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genesummary/README.html)