- recipe bioconductor-genomautomorphism
Compute the automorphisms between DNA's Abelian group representations
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GenomAutomorphism.html
- License:
Artistic-2.0
- Recipe:
This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.
- package bioconductor-genomautomorphism¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomautomorphism
and update with:
conda update bioconductor-genomautomorphism
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomautomorphism:<tag>
(see bioconductor-genomautomorphism/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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