recipe bioconductor-genomautomorphism

Compute the automorphisms between DNA's Abelian group representations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomAutomorphism.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomautomorphism/meta.yaml

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

package bioconductor-genomautomorphism

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-doparallel

• r-dplyr

• r-foreach

• r-numbers

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomautomorphism

and update with:

conda update bioconductor-genomautomorphism

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomautomorphism:<tag>

(see bioconductor-genomautomorphism/tags for valid values for <tag>)

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