Package Recipe 'bioconductor-genomeinfodb'

recipe bioconductor-genomeinfodb

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/GenomeInfoDb.html
License:: Artistic-2.0
Recipe:: /bioconductor-genomeinfodb/meta.yaml
Links:: biotools: genomeinfodb, doi: 10.1038/nmeth.3252

Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

package bioconductor-genomeinfodb¶

Versions:

1.34.9-0, 1.34.8-0, 1.34.1-0, 1.30.1-0, 1.30.0-0, 1.28.0-0, 1.26.4-0, 1.26.0-0, 1.24.0-0,

1.34.9-0, 1.34.8-0, 1.34.1-0, 1.30.1-0, 1.30.0-0, 1.28.0-0, 1.26.4-0, 1.26.0-0, 1.24.0-0, 1.22.0-0, 1.20.0-1, 1.18.1-0, 1.16.0-0, 1.14.0-0, 1.12.3-0, 1.10.3-0, 1.8.7-0, 1.6.3-0, 1.6.1-0, 1.6.0-0, 1.4.3-0

Depends:

bioconductor-biocgenerics >=0.44.0,<0.45.0
bioconductor-genomeinfodbdata >=1.2.0,<1.3.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-s4vectors >=0.36.0,<0.37.0
r-base >=4.2,<4.3.0a0
r-rcurl

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomeinfodb

and update with:

conda update bioconductor-genomeinfodb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomeinfodb:<tag>

(see bioconductor-genomeinfodb/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomeinfodb/README.html)