bioconductor-genomicalignments

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Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Home http://bioconductor.org/packages/3.5/bioc/html/GenomicAlignments.html
Versions 1.10.0, 1.12.2, 1.14.0, 1.6.0, 1.6.1, 1.6.3, 1.8.4
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-genomicalignments

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicalignments

and update with:

conda update bioconductor-genomicalignments

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-genomicalignments.