Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
|Versions||1.10.0, 1.6.0, 1.6.1, 1.6.3, 1.8.4|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicalignments
and update with:
conda update bioconductor-genomicalignments
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-genomicalignments.