recipe bioconductor-genomicdatacommons

NIH / NCI Genomic Data Commons Access

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomicDataCommons.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomicdatacommons/meta.yaml

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

package bioconductor-genomicdatacommons

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0, 

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.3-0,  1.2.0-0,  1.0.5-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-httr

• r-jsonlite

• r-magrittr

• r-rappdirs

• r-readr

• r-rlang

• r-tibble

• r-xml2

Required By:

• bioconductor-tcgautils

• bioconductor-gdcrnatools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicdatacommons

and update with:

conda update bioconductor-genomicdatacommons

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicdatacommons:<tag>

(see bioconductor-genomicdatacommons/tags for valid values for <tag>)

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