recipe bioconductor-genomicdistributionsdata

Reference data for GenomicDistributions package

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/GenomicDistributionsData.html

License

BSD_2_clause + file LICENSE

Recipe

/bioconductor-genomicdistributionsdata/meta.yaml

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

package bioconductor-genomicdistributionsdata

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-annotationfilter >=1.18.0,<1.19.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-ensembldb >=2.18.0,<2.19.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-data.table

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicdistributionsdata

and update with:

conda update bioconductor-genomicdistributionsdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicdistributionsdata:<tag>

(see bioconductor-genomicdistributionsdata/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicdistributionsdata/README.html)