recipe bioconductor-genomicdistributionsdata

Reference data for GenomicDistributions package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/GenomicDistributionsData.html

License:

BSD_2_clause + file LICENSE

Recipe:

/bioconductor-genomicdistributionsdata/meta.yaml

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

package bioconductor-genomicdistributionsdata

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-annotationfilter:

>=1.26.0,<1.27.0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-bsgenome:

>=1.70.0,<1.71.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-ensembldb:

>=2.26.0,<2.27.0

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-genomeinfodb:

>=1.38.0,<1.39.0

depends bioconductor-genomicfeatures:

>=1.54.0,<1.55.0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

depends r-data.table:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-genomicdistributionsdata

and update with::

   mamba update bioconductor-genomicdistributionsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-genomicdistributionsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-genomicdistributionsdata:<tag>

(see `bioconductor-genomicdistributionsdata/tags`_ for valid values for ``<tag>``)

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