A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
|Versions||1.22.0, 1.22.13, 1.22.4, 1.22.6, 1.24.5, 1.26.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicfeatures
and update with:
conda update bioconductor-genomicfeatures
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-genomicfeatures.