- recipe bioconductor-genomicinteractionnodes
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GenomicInteractionNodes.html
- License:
file LICENSE
- Recipe:
The GenomicInteractionNodes package can import interactions from bedpe file and define the interaction nodes, the genomic interaction sites with multiple interaction loops. The interaction nodes is a binding platform regulates one or multiple genes. The detected interaction nodes will be annotated for downstream validation.
- package bioconductor-genomicinteractionnodes¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-go.db
>=3.16.0,<3.17.0
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rbgl
>=1.74.0,<1.75.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicinteractionnodes
and update with:
conda update bioconductor-genomicinteractionnodes
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicinteractionnodes:<tag>
(see bioconductor-genomicinteractionnodes/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicinteractionnodes/README.html)