recipe bioconductor-genomicinteractionnodes

A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomicInteractionNodes.html

License:

file LICENSE

Recipe:

/bioconductor-genomicinteractionnodes/meta.yaml

The GenomicInteractionNodes package can import interactions from bedpe file and define the interaction nodes, the genomic interaction sites with multiple interaction loops. The interaction nodes is a binding platform regulates one or multiple genes. The detected interaction nodes will be annotated for downstream validation.

package bioconductor-genomicinteractionnodes

Versions:

1.2.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rbgl >=1.74.0,<1.75.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicinteractionnodes

and update with:

conda update bioconductor-genomicinteractionnodes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicinteractionnodes:<tag>

(see bioconductor-genomicinteractionnodes/tags for valid values for <tag>)

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