recipe bioconductor-genomicinteractions

Utilities for handling genomic interaction data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/GenomicInteractions.html

License:

GPL-3

Recipe:

/bioconductor-genomicinteractions/meta.yaml

Links:

biotools: genomicinteractions, doi: 10.1186/s12864-015-2140-x

Utilities for handling genomic interaction data such as ChIA-PET or Hi-C, annotating genomic features with interaction information, and producing plots and summary statistics.

package bioconductor-genomicinteractions

Versions:

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-interactionset >=1.22.0,<1.23.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-gridextra

• r-igraph

• r-stringr

Required By:

• bioconductor-hicdcplus

• bioconductor-cagefightr

• bioconductor-spatzie

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicinteractions

and update with:

conda update bioconductor-genomicinteractions

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicinteractions:<tag>

(see bioconductor-genomicinteractions/tags for valid values for <tag>)

Download stats

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