recipe bioconductor-genomicinteractions

Utilities for handling genomic interaction data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/GenomicInteractions.html

License

GPL-3

Recipe

/bioconductor-genomicinteractions/meta.yaml

Links

biotools: genomicinteractions, doi: 10.1186/s12864-015-2140-x

Utilities for handling genomic interaction data such as ChIA-PET or Hi-C, annotating genomic features with interaction information, and producing plots and summary statistics.

package bioconductor-genomicinteractions

Versions

1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0, 

1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-gviz >=1.36.0,<1.37.0

• bioconductor-interactionset >=1.20.0,<1.21.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.52.0,<1.53.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-gridextra

• r-igraph

• r-stringr

Required By

• bioconductor-cagefightr

• bioconductor-hicdcplus

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicinteractions

and update with:

conda update bioconductor-genomicinteractions

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicinteractions:<tag>

(see bioconductor-genomicinteractions/tags for valid values for <tag>)

Download stats

Link to this page

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