Package Recipe 'bioconductor-genomicinteractions'

recipe bioconductor-genomicinteractions

Utilities for handling genomic interaction data

Homepage: https://bioconductor.org/packages/3.14/bioc/html/GenomicInteractions.html
License: GPL-3
Recipe: /bioconductor-genomicinteractions/meta.yaml
Links: biotools: genomicinteractions, doi: 10.1186/s12864-015-2140-x

Utilities for handling genomic interaction data such as ChIA-PET or Hi-C, annotating genomic features with interaction information, and producing plots and summary statistics.

package bioconductor-genomicinteractions¶

Versions

1.28.0-0, 1.26.0-0, 1.24.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-1, 1.16.0-1, 1.16.0-0,

1.28.0-0, 1.26.0-0, 1.24.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-1, 1.16.0-1, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

bioconductor-biobase >=2.54.0,<2.55.0
bioconductor-biocgenerics >=0.40.0,<0.41.0
bioconductor-genomeinfodb >=1.30.0,<1.31.0
bioconductor-genomicranges >=1.46.0,<1.47.0
bioconductor-gviz >=1.38.0,<1.39.0
bioconductor-interactionset >=1.22.0,<1.23.0
bioconductor-iranges >=2.28.0,<2.29.0
bioconductor-rsamtools >=2.10.0,<2.11.0
bioconductor-rtracklayer >=1.54.0,<1.55.0
bioconductor-s4vectors >=0.32.0,<0.33.0
r-base >=4.1,<4.2.0a0
r-data.table
r-dplyr
r-ggplot2
r-gridextra
r-igraph
r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicinteractions

and update with:

conda update bioconductor-genomicinteractions

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicinteractions:<tag>

(see bioconductor-genomicinteractions/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicinteractions/README.html)