- recipe bioconductor-genomicstate
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
- Homepage:
https://bioconductor.org/packages/3.16/data/annotation/html/GenomicState.html
- License:
Artistic-2.0
- Recipe:
This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.
- package bioconductor-genomicstate¶
-
- Versions:
0.99.15-2
,0.99.15-1
,0.99.15-0
,0.99.9-3
,0.99.9-2
,0.99.9-1
,0.99.9-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-bumphunter
>=1.40.0,<1.41.0
bioconductor-data-packages
>=20221102
bioconductor-derfinder
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicstate
and update with:
conda update bioconductor-genomicstate
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicstate:<tag>
(see bioconductor-genomicstate/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicstate/README.html)