- recipe bioconductor-genomicsupersignature
Interpretation of RNA-seq experiments through robust, efficient comparison to public databases
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/GenomicSuperSignature.html
- License:
Artistic-2.0
- Recipe:
This package provides a novel method for interpreting new transcriptomic datasets through near-instantaneous comparison to public archives without high-performance computing requirements. Through the pre-computed index, users can identify public resources associated with their dataset such as gene sets, MeSH term, and publication. Functions to identify interpretable annotations and intuitive visualization options are implemented in this package.
- package bioconductor-genomicsupersignature¶
-
- Versions:
1.2.0-0
,1.0.1-0
- Depends:
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocfilecache
>=2.2.0,<2.3.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicsupersignature
and update with:
conda update bioconductor-genomicsupersignature
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicsupersignature:<tag>
(see bioconductor-genomicsupersignature/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicsupersignature/README.html)