recipe bioconductor-genvisr

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GenVisR.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-genvisr/meta.yaml

Links

biotools: genvisr

package bioconductor-genvisr

Versions

1.14.2-0, 1.14.1-1, 1.14.1-0, 1.12.1-0, 1.8.0-0, 1.6.3-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biomart >=2.38.0,<2.39.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-base >=3.5.1,<3.5.2.0a0

• r-data.table

• r-dbi

• r-ffield

• r-ggplot2 >=2.1.0

• r-gridextra >=2.0.0

• r-gtable

• r-gtools

• r-plyr >=1.8.3

• r-reshape2

• r-scales

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genvisr

and update with:

conda update bioconductor-genvisr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genvisr:<tag>

(see bioconductor-genvisr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genvisr/README.html)