recipe bioconductor-genvisr

Genomic Visualizations in R

Homepage

https://bioconductor.org/packages/3.12/bioc/html/GenVisR.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-genvisr/meta.yaml

Links

biotools: genvisr

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

package bioconductor-genvisr

Versions

1.22.0-0,  1.20.0-0,  1.18.1-0,  1.16.0-1,  1.14.2-0,  1.14.1-1,  1.14.1-0,  1.12.1-0,  1.8.0-0, 

1.22.0-0,  1.20.0-0,  1.18.1-0,  1.16.0-1,  1.14.2-0,  1.14.1-1,  1.14.1-0,  1.12.1-0,  1.8.0-0,  1.6.3-0

Depends

• bioconductor-annotationdbi >=1.52.0,<1.53.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biomart >=2.46.0,<2.47.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-bsgenome >=1.58.0,<1.59.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-variantannotation >=1.36.0,<1.37.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dbi

• r-ffield

• r-ggplot2 >=2.1.0

• r-gridextra >=2.0.0

• r-gtable

• r-gtools

• r-plyr >=1.8.3

• r-reshape2

• r-scales

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genvisr

and update with:

conda update bioconductor-genvisr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genvisr:<tag>

(see bioconductor-genvisr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genvisr/README.html)